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1

Interferon Signature in the Blood in Inflammatory Common Variable Immune Deficiency

Park, Joon, Munagala, Indira, Xu, Hui, Blankenship, Derek, Maffucci, Patrick, Chaussabel, Damien, Banchereau, Jacques, Pascual, Virginia, Cunningham-Rundles, Charlotte, Kaveri, Srinivas

Journal:

Year:

2013

Language:

english

File:

PDF, 3.96 MB

english, 2013

2

Analysis of Significance Patterns Identifies Ubiquitous and Disease-Specific Gene-Expression Signatures in Patient Peripheral Blood Leukocytes

DAMIEN CHAUSSABEL, WINDY ALLMAN, ASUNCION MEJIAS, WENDY CHUNG, LYNDA BENNETT, OCTAVIO RAMILO, VIRGINIA PASCUAL, A. KAROLINA PALUCKA, JACQUES BANCHEREAU

Journal:

Annals of the New York Academy of Sciences

Year:

2005

Language:

english

File:

PDF, 1.51 MB

english, 2005

3

Transketolase and vitamin B1 influence on ROS-dependent neutrophil extracellular traps (NETs) formation

Riyapa, Donporn, Rinchai, Darawan, Muangsombut, Veerachat, Wuttinontananchai, Chayanin, Toufiq, Mohammed, Chaussabel, Damien, Ato, Manabu, Blackwell, Jenefer M., Korbsrisate, Sunee, Palaniyar, Nades

Journal:

Year:

2019

Language:

english

File:

PDF, 1.92 MB

english, 2019

4

Systemic sclerosis and lupus: Points in an interferon-mediated continuum

Shervin Assassi, Maureen D. Mayes, Frank C. Arnett, Pravitt Gourh, Sandeep K. Agarwal, Terry A. McNearney, Damien Chaussabel, Nancy Oommen, Michael Fischbach, Kairav R. Shah, Julio Charles, Virginia P

Journal:

Arthritis & Rheumatism

Year:

2010

Language:

english

File:

PDF, 357 KB

english, 2010

5

Programmed death ligand 1 is over-expressed by neutrophils in the blood of patients with active tuberculosis

Finlay W. McNab, Matthew P. R. Berry, Christine M. Graham, Susannah A. A. Bloch, Tolu Oni, Katalin A. Wilkinson, Robert J. Wilkinson, Onn M. Kon, Jacques Banchereau, Damien Chaussabel, Anne O'Garra

Journal:

European Journal of Immunology

Year:

2011

Language:

english

File:

PDF, 291 KB

english, 2011

6

Microarray-based identification of novel biomarkers in IL-1-mediated diseases

Florence Allantaz, Damien Chaussabel, Jacques Banchereau, Virginia Pascual

Journal:

Current Opinion in Immunology

Year:

2007

Language:

english

File:

PDF, 1.02 MB

english, 2007

7

Assessing the human immune system through blood transcriptomics

Damien Chaussabel, Virginia Pascual, Jacques Banchereau

Journal:

Year:

2010

Language:

english

File:

PDF, 2.26 MB

english, 2010

8

An interferon signature is associated with HAM/TSP but not viral containment in HTLV-1 infection

Sonja Tattermusch, Jason Skinner, Damien Chaussabel, Jacques Banchereau, Matthew P Berry, Anne O’Garra, Graham P Taylor, Charles R M Bangham

Journal:

Year:

2011

Language:

english

File:

PDF, 165 KB

english, 2011

9

Ribosomal protein mRNAs are translationally-regulated during human dendritic cells activation by LPS

Maurizio Ceppi, Giovanna Clavarino, Evelina Gatti, Enrico K Schmidt, Aude de Gassart, Derek Blankenship, Gerald Ogola, Jacques Banchereau, Damien Chaussabel, Philippe Pierre

Journal:

Immunome Research

Year:

2009

Language:

english

File:

PDF, 1.47 MB

english, 2009

10

A Modular Analysis Framework for Blood Genomics Studies: Application to Systemic Lupus Erythematosus

Damien Chaussabel, Charles Quinn, Jing Shen, Pinakeen Patel, Casey Glaser, Nicole Baldwin, Dorothee Stichweh, Derek Blankenship, Lei Li, Indira Munagala, Lynda Bennett, Florence Allantaz, Asuncion Mej

Journal:

Year:

2008

Language:

english

File:

PDF, 2.27 MB

english, 2008

11

How the study of children with rheumatic diseases identified interferon-α and interleukin-1 as novel therapeutic targets

Virginia Pascual, Florence Allantaz, Pinakeen Patel, A. Karolina Palucka, Damien Chaussabel, Jacques Banchereau

Journal:

Immunological Reviews

Year:

2008

Language:

english

File:

PDF, 1.84 MB

english, 2008

12

TLR recognition of self nucleic acids hampers glucocorticoid activity in lupus

Guiducci, Cristiana, Gong, Mei, Xu, Zhaohui, Gill, Michelle, Chaussabel, Damien, Meeker, Thea, Chan, Jean H., Wright, Tracey, Punaro, Marilynn, Bolland, Silvia

Journal:

Year:

2010

Language:

english

File:

PDF, 751 KB

english, 2010

13

The immunity-related GTPase Irgm1 promotes the expansion of activated CD4+ T cell populations by preventing interferon-γ-induced cell death

Feng, Carl G, Zheng, Lixin, Jankovic, Dragana, Báfica, André, Cannons, Jennifer L, Watford, Wendy T, Chaussabel, Damien, Hieny, Sara, Caspar, Patricia, Schwartzberg, Pamela L

Journal:

Nature Immunology

Year:

2008

Language:

english

File:

PDF, 863 KB

english, 2008

14

Influence of the transcription factor RORγt on the development of NKp46+ cell populations in gut and skin

Luci, Carmelo, Reynders, Ana, Ivanov, Ivaylo I, Cognet, Celine, Chiche, Laurent, Chasson, Lionel, Hardwigsen, Jean, Anguiano, Esperanza, Banchereau, Jacques, Chaussabel, Damien

Journal:

Nature Immunology

Year:

2008

Language:

english

File:

PDF, 877 KB

english, 2008

15

Data management: it starts at the bench

Chaussabel, Damien, Ueno, Hideki, Banchereau, Jacques, Quinn, Charles

Journal:

Nature Immunology

Year:

2009

Language:

english

File:

PDF, 507 KB

english, 2009

16

SP100 inhibits ETS1 activity in primary endothelial cells

Yordy, John S, Moussa, Omar, Pei, Huiping, Chaussabel, Damien, Li, Runzhao, Watson, Dennis K

Journal:

Year:

2004

Language:

english

File:

PDF, 713 KB

english, 2004

17

Translation of genomics research at the bedside: The promise and the challenge

Damien Chaussabel

Journal:

Clinical Immunology

Year:

2008

Language:

english

File:

PDF, 128 KB

english, 2008

18

T.51. Decreased Central Memory T Cells and Increased Monocytes in Children with Invasive Staphylococcus Aureus

Romain Banchereau, Monica Ardura, Tiziana Di Pucchio, Asuncion Mejias, Damien Chaussabel, Jacques Banchereau, Octavio Ramilo

Journal:

Clinical Immunology

Year:

2009

Language:

english

File:

PDF, 52 KB

english, 2009

19

Genome-wide Innate Immune Responsiveness Profiles of Patients with Inborn Errors of Toll-like Receptor Signaling

Laia Alsina, Zhongbo Jin, Rungnapa Pankla, Pegah Ghandil, Anne Puel, Capucine Picard, Horst von Bernuth, Shen-Ying Zhang, Jacques Banchereau, Laurent Abel, Jean-Laurent Casanova, Damien Chaussabel

Journal:

Clinical Immunology

Year:

2010

Language:

english

File:

PDF, 163 KB

english, 2010

20

Dendritic Cells, Therapeutic Vectors of Immunity and Tolerance

Damien Chaussabel, Jacques Banchereau

Journal:

American Journal of Transplantation

Year:

2005

Language:

english

File:

PDF, 40 KB

english, 2005

21

Functional Specializations of Human Epidermal Langerhans Cells and CD14+ Dermal Dendritic Cells

Eynav Klechevsky, Rimpei Morita, Maochang Liu, Yanying Cao, Sebastien Coquery, LuAnn Thompson-Snipes, Francine Briere, Damien Chaussabel, Gerard Zurawski, A. Karolina Palucka, Yoram Reiter, Jacques Ba

Journal:

Year:

2008

Language:

english

File:

PDF, 1.63 MB

english, 2008

22

Production of interleukin-27 by human neutrophils regulates their function during bacterial infection

Rinchai, Darawan, Khaenam, Prasong, Kewcharoenwong, Chidchamai, Buddhisa, Surachat, Pankla, Rungnapa, Chaussabel, Damien, Bancroft, Gregory J., Lertmemongkolchai, Ganjana

Journal:

European Journal of Immunology

Year:

2012

Language:

english

File:

PDF, 1001 KB

english, 2012

23

A systematic approach to biomarker discovery; Preamble to "the iSBTc-FDA taskforce on immunotherapy biomarkers"

Lisa H Butterfield, Mary L Disis, Bernard A Fox, Peter P Lee, Samir N Khleif, Magdalena Thurin, Giorgio Trinchieri, Ena Wang, Jon Wigginton, Damien Chaussabel, George Coukos, Madhav Dhodapkar, Leif Hå

Journal:

Journal of Translational Medicine

Year:

2008

Language:

english

File:

PDF, 248 KB

english, 2008

24

Emerging concepts in biomarker discovery; The US-Japan workshop on immunological molecular markers in oncology

Hideaki Tahara, Marimo Sato, Magdalena Thurin, Ena Wang, Lisa H Butterfield, Mary L Disis, Bernard A Fox, Peter P Lee, Samir N Khleif, Jon M Wigginton, Stefan Ambs, Yasunori Akutsu, Damien Chaussabel,

Journal:

Journal of Translational Medicine

Year:

2009

Language:

english

File:

PDF, 677 KB

english, 2009

25

A Genomic Approach to Human Autoimmune Diseases

Pascual, Virginia, Chaussabel, Damien, Banchereau, Jacques

Journal:

Annual Review of Immunology

Year:

2010

Language:

english

File:

PDF, 1.79 MB

english, 2010

26

Systems Biology Approaches Reveal a Specific Interferon-Inducible Signature in HTLV-1 Associated Myelopathy

Tattermusch, Sonja, Skinner, Jason A., Chaussabel, Damien, Banchereau, Jacques, Berry, Matthew P., McNab, Finlay W., O'Garra, Anne, Taylor, Graham P., Bangham, Charles R. M., Ross, Susan R.

Journal:

Year:

2012

Language:

english

File:

PDF, 2.16 MB

english, 2012

27

Disease Mechanisms in Rheumatology-Tools and Pathways: Current Perspectives on Systems Immunology Approaches to Rheumatic Diseases

Chiche, Laurent, Jourde-Chiche, Noemie, Pascual, Virginia, Chaussabel, Damien

Journal:

Arthritis & Rheumatism

Year:

2013

Language:

english

File:

PDF, 312 KB

english, 2013

28

Mining microarray expression data by literature profiling

Damien Chaussabel, Alan Sher

Journal:

Year:

2002

Language:

english

File:

PDF, 4.12 MB

english, 2002

29

Democratizing systems immunology with modular transcriptional repertoire analyses

Chaussabel, Damien, Baldwin, Nicole

Journal:

Nature Reviews Immunology

Year:

2014

Language:

english

File:

PDF, 1.16 MB

english, 2014

30

Transforming Growth Factor β Signaling Controls Activities of Human Intestinal CD8+T Suppressor Cells

Rabinowitz, Keren M., Wang, Yuanyuan, Chen, Edward Y., Hovhannisyan, Zara, Chiang, David, Berin, M. Cecilia, Dahan, Stephanie, Chaussabel, Damien, Ma'ayan, Avi, Mayer, Lloyd

Journal:

Gastroenterology

Year:

2013

Language:

english

File:

PDF, 3.00 MB

english, 2013

31

Gene Expression in Peripheral Blood Mononuclear Cells from Children with Diabetes

Kaizer, Ellen C., Glaser, Casey L., Chaussabel, Damien, Banchereau, Jacques, Pascual, Virginia, White, Perrin C.

Journal:

Journal of Clinical Endocrinology & Metabolism

Year:

2007

Language:

english

File:

PDF, 866 KB

english, 2007

32

Biomedical Literature Mining

Dr Damien Chaussabel

Journal:

American Journal of PharmacoGenomics

Year:

2004

Language:

english

File:

PDF, 1.48 MB

english, 2004

33

Erratum to: Mutations ofHNRNPA0andWIF1predispose members of a large family to multiple cancers

Wei, Chongjuan, Peng, Bo, Han, Younghun, Chen, Wei V., Rother, Joshua, Tomlinson, Gail E., Richard Boland, C., Chaussabel, Damien, Frazier, Marsha L., Amos, Christopher I.

Journal:

Familial Cancer

Year:

2015

Language:

english

File:

PDF, 115 KB

english, 2015

34

A vision and a prescription for big data–enabled medicine

Chaussabel, Damien, Pulendran, Bali

Journal:

Nature Immunology

Year:

2015

Language:

english

File:

PDF, 460 KB

english, 2015

35

Copy Number Loss of the Interferon Gene Cluster in Melanomas Is Linked to Reduced T Cell Infiltrate and Poor Patient Prognosis

Linsley, Peter S., Speake, Cate, Whalen, Elizabeth, Chaussabel, Damien, Castro, Maria G.

Journal:

Year:

2014

Language:

english

File:

PDF, 1.26 MB

english, 2014

36

Assessment of immune status using blood transcriptomics and potential implications for global health

Chaussabel, Damien

Journal:

Seminars in Immunology

Year:

2015

Language:

english

File:

PDF, 1.60 MB

english, 2015

37

Diarrheagenic Escherichia coli Carrying Supplementary Virulence Genes Are an Important Cause of Moderate to Severe Diarrhoeal Disease in Mexico

Patzi-Vargas, Sandra, Zaidi, Mussaret Bano, Perez-Martinez, Iza, León–Cen, Magda, Michel-Ayala, Alba, Chaussabel, Damien, Estrada-Garcia, Teresa, Picardeau, Mathieu

Journal:

PLoS Neglected Tropical Diseases

Year:

2015

Language:

english

File:

PDF, 698 KB

english, 2015

38

Gene expression changes in human islets exposed to type 1 diabetic serum

Jackson, Andrew M., Kanak, Mazhar A., Grishman, Ellen K., Chaussabel, Damien, Levy, Marlon F., Naziruddin, Bashoo

Journal:

Year:

2012

Language:

english

File:

PDF, 1.58 MB

english, 2012

39

Adult-onset type 1 diabetes patients display decreased IGRP-specific Tr1 cells in blood

Chujo, Daisuke, Nguyen, Thien-Son, Foucat, Emile, Blankenship, Derek, Banchereau, Jacques, Nepom, Gerald T., Chaussabel, Damien, Ueno, Hideki

Journal:

Clinical Immunology

Year:

2015

Language:

english

File:

PDF, 1.82 MB

english, 2015

40

Transcriptional network predicts viral set point during acute HIV-1 infection

Chang, Hsun-Hsien, Soderberg, Kelly, Skinner, Jason A, Banchereau, Jacques, Chaussabel, Damien, Haynes, Barton F, Ramoni, Marco, Letvin, Norman L

Journal:

Journal of the American Medical Informatics Association

Year:

2012

Language:

english

File:

PDF, 443 KB

english, 2012

41

A 380-gene meta-signature of active tuberculosis compared with healthy controls

Blankley, Simon, Graham, Christine M., Levin, Joe, Turner, Jacob, Berry, Matthew P.R., Bloom, Chloe I., Xu, Zhaohui, Pascual, Virgina, Banchereau, Jacques, Chaussabel, Damien, Breen, Ronan, Santis, Ge

Journal:

European Respiratory Journal

Year:

2016

Language:

english

File:

PDF, 403 KB

english, 2016

42

Nasopharyngeal Microbiota, Host Transcriptome and Disease Severity in Children with Respiratory Syncytial Virus Infection

de Steenhuijsen Piters, Wouter A.A., Heinonen, Santtu, Hasrat, Raiza, Bunsow, Eleonora, Smith, Bennett, Suarez-Arrabal, Maria-Carmen, Chaussabel, Damien, Cohen, Daniel M., Sanders, Elisabeth A.M., Ram

Journal:

American Journal of Respiratory and Critical Care Medicine

Year:

2016

Language:

english

File:

PDF, 6.41 MB

english, 2016

43

Introducing a New Dimension to Molecular Disease Classifications

Jourde-Chiche, Noémie, Chiche, Laurent, Chaussabel, Damien

Journal:

Trends in Molecular Medicine

Year:

2016

Language:

english

File:

PDF, 535 KB

english, 2016

44

Improving Efficacy of Clinical Islet Transplantation With Iodixanol-Based Islet Purification, Thymoglobulin Induction, and Blockage of IL-1β and TNF-α

Matsumoto, Shinichi, Takita, Morihito, Chaussabel, Damien, Noguchi, Hirofumi, Shimoda, Masayuki, Sugimoto, Koji, Itoh, Takeshi, Chujo, Daisuke, SoRelle, Jeff, Onaca, Nicholas, Naziruddin, Bashoo, Levy

Journal:

Cell Transplantation

Year:

2011

Language:

english

File:

PDF, 75 KB

english, 2011

45

Association of RNA Biosignatures With Bacterial Infections in Febrile Infants Aged 60 Days or Younger

Mahajan, Prashant, Kuppermann, Nathan, Mejias, Asuncion, Suarez, Nicolas, Chaussabel, Damien, Casper, T. Charles, Smith, Bennett, Alpern, Elizabeth R., Anders, Jennifer, Atabaki, Shireen M., Bennett,

Journal:

JAMA The Journal of the American Medical Association

Year:

2016

Language:

english

File:

PDF, 1.54 MB

english, 2016

46

Modular transcriptional repertoire analyses identify a blood neutrophil signature as a candidate biomarker for lupus nephritis

Jourde-Chiche, Noémie, Whalen, Elizabeth, Gondouin, Bertrand, Speake, Cate, Gersuk, Vivian, Dussol, Bertrand, Burtey, Stephane, Pascual, Virginia, Chaussabel, Damien, Chiche, Laurent

Journal:

Year:

2016

Language:

english

File:

PDF, 844 KB

english, 2016

47

Using “Collective Omics Data” for Biomedical Research Training

Chaussabel, Damien, Rinchai, Darawan

Journal:

Year:

2018

Language:

english

File:

PDF, 776 KB

english, 2018

48

Progression of whole-blood transcriptional signatures from interferon-induced to neutrophil-associated patterns in severe influenza

Dunning, Jake, Blankley, Simon, Hoang, Long T., Cox, Mike, Graham, Christine M., James, Philip L., Bloom, Chloe I., Chaussabel, Damien, Banchereau, Jacques, Brett, Stephen J., Moffatt, Miriam F., O’Ga

Journal:

Nature Immunology

Year:

2018

Language:

english

File:

PDF, 2.42 MB

english, 2018

49

118Transcriptional Profiling Discriminates Complete and Incomplete Kawasaki Disease (KD) from Adenovirus infection (HAdV)

Jaggi, Preeti, Mejias, Asuncion, Tremoulet, Adriana H., Pascual, Virginia, Burns, Jane C., Chaussabel, Damien, Ramilo, Octavio

Journal:

Open Forum Infectious Diseases

Year:

2014

Language:

english

File:

PDF, 43 KB

english, 2014

50

Enhanced Monocyte Response and Decreased Central Memory T Cells in Children with Invasive Staphylococcus aureus Infections

Ardura, Monica I., Banchereau, Romain, Mejias, Asuncion, Di Pucchio, Tiziana, Glaser, Casey, Allantaz, Florence, Pascual, Virginia, Banchereau, Jacques, Chaussabel, Damien, Ramilo, Octavio, Ratner, Ad

Journal:

Year:

2009

Language:

english

File:

PDF, 1.71 MB

english, 2009